miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25133888|gb|CA589310.1|CA589310 AGCGGAATCGAGACTGGTTCAGACAAAGTGGTCCCACGTTTAAAGATTTGCAAACATGGTGAAGATTTTTGTCGGAAATC
TGCCCCGAGAGGCAAACCAGGAGGAAATCAAGGCACTCTTCACAGAATATGGCACAGTGACAGAGTGTGCCATCATCAAG
AACTACGCCTTTGTTCACATGGATGACCGCAAGGCCGCCACAAAGGCAATAAAGAGCCTCCACCTGCACAAGCTTCACGG
AACAGCAATCAACGTAGAAGCCAGCCACGGGAAGAACCCCGGCGCCGTCAAGTTGCACGTTGCAAATGTAGAAAAGGGTG
CTGACGATGAGCTCCGCGCACTCTTCGAAGAGTACGGCTCTGTCACAGAGTGTGCTGTCGTTAAGAATTTTGCTTTTGTC
CACATGTCAAATTCAGATGAGGCCATGGATGCAATTAAGGGACTGGATAACACTGAATTTCAAGGAAAACGTATCCATGT
CCAGATTTCAAAGAGTCGTCCCAGACATGAAAAACAGGATGCCTATCCTCCTCCTCCTCCTCCCCCAGACTGCGGTGGCT
ATTGGCCTCCTCATTACCCAGGGGACCGACCAGAGCCCCCCCCACCTGGTTACATGAGAGGCCGCATTAGCCAT




Most similar to sp|Q9BDY9|RBM4_RABIT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus
           GN=RBM4 PE=2 SV=1
          Length = 359

 Score =  191 bits (484), Expect = 4e-48
 Identities = 91/151 (60%), Positives = 119/151 (78%), Gaps = 1/151 (0%)
 Frame = +2

Query: 56  MVKIFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKSLHLHKL 235
           MVK+F+GNLPREA ++EI++LF +YG V EC IIKNY FVH++D+ AA  AI++LH +KL
Sbjct: 1   MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60

Query: 236 HGTAINVEASHGKNPGAVKLHVANVEKG-ADDELRALFEEYGSVTECAVVKNFAFVHMSN 412
           HG  INVEAS  K+  + KLHV N+     + ELRA FEEYG V EC +VK++AFVHM  
Sbjct: 61  HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120

Query: 413 SDEAMDAIKGLDNTEFQGKRIHVQISKSRPR 505
           +++A++AI+GLDNTEFQGKR+HVQ+S SR R
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 151